Pipeline Info

Pipeline Output

The pipeline can be run as a batch job or it can be run individually. That is, you can run it on many samples by supplying a Samplesheet to runsamplesheet.sh or a single sample can be run via runsample. As such, you need to understand that [[runsamplesheet.sh]] essentially just runs runsample for every sample in your [[samplesheet]] then runs a few graphics scripts afterwards on all the completed projects.

• Individual sample project directories under Projects/

  • runsample output

• Entire Project output

  • graphs.sh output