vagrant-provision.py¶
Just a wrapper around the manual installation process.
Comes with two options:
- vagrant-provision.py –install-system-packages
- vagrant-provision.py –install-pipeline
Install System Packages¶
Just runs the following in a command shell
python setup.py install_system_packages
Install Pipeline¶
Essentially runs all the steps after the system package installation for you
- git clone to ~/ngs_mapper
- python setup.py install_python
- setup virtualenv into ~/.ngs_mapper
- activate ~/.ngs_mapper
- python setup.py install