Pipeline Info¶
Pipeline Output¶
The pipeline can be run as a batch job or it can be run individually. That is, you can run it on many samples by supplying a Samplesheet to runsamplesheet.sh or a single sample can be run via runsample
.
As such, you need to understand that [[runsamplesheet.sh]] essentially just runs runsample
for every sample in your [[samplesheet]] then runs a few graphics scripts afterwards on all the completed projects.
- Individual sample project directories under Projects/
- runsample output
- Entire Project output
- graphs.sh output